Robi D Mitra: search on Z-Library

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1

High-throughput single-cell functional elucidation of neurodevelopmental diseaseâassociated genes reveals convergent mechanisms altering neuronal differentiation

Lalli, Matthew A., Avey, Denis, Dougherty, Joseph D., Milbrandt, Jeffrey, Mitra, Robi D.

Journal:

Genome Research

Year:

2020

File:

PDF, 9.35 MB

2020

2

Digital quantitative measurements of gene expression

Venugopal Mikkilineni, Robi D. Mitra, Joshua Merritt, Jason R. DiTonno, George M. Church, Babatunde Ogunnaike, Jeremy S. Edwards

Journal:

Biotechnology and Bioengineering

Year:

2004

Language:

english

File:

PDF, 512 KB

english, 2004

3

Erratum to “Fluorescent in situ sequencing on polymerase colonies” [Anal. Biochem. 320 (2003) 55–65]

Robi D. Mitra, Jay Shendure, Jerzy Olejnik, Edyta-Krzymanska-Olejnik, George M. Church

Journal:

Analytical Biochemistry

Year:

2004

Language:

english

File:

PDF, 76 KB

english, 2004

4

Fluorescent in situ sequencing on polymerase colonies

Robi D Mitra, Jay Shendure, Jerzy Olejnik, Edyta-Krzymanska-Olejnik, George M Church

Journal:

Analytical Biochemistry

Year:

2003

Language:

english

File:

PDF, 450 KB

english, 2003

5

Sensitive single-molecule protein quantification and protein complex detection in a microarray format

Lee A. Tessler, Robi D. Mitra

Journal:

Year:

2011

Language:

english

File:

PDF, 180 KB

english, 2011

6

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

Cohen, Barak A., Mitra, Robi D., Hughes, Jason D., Church, George M.

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 550 KB

english, 2000

7

Long-range polony haplotyping of individual human chromosome molecules

Zhang, Kun, Zhu, Jun, Shendure, Jay, Porreca, Gregory J, Aach, John D, Mitra, Robi D, Church, George M

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 327 KB

english, 2006

8

'Calling Cards' method for high-throughput identification of targets of yeast DNA-binding proteins

Wang, Haoyi, Heinz, Michael E, Crosby, Seth D, Johnston, Mark, Mitra, Robi D

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 321 KB

english, 2008

9

Advanced sequencing technologies: methods and goals

Shendure, Jay, Mitra, Robi D., Varma, Chris, Church, George M.

Journal:

Nature Reviews Genetics

Year:

2004

Language:

english

File:

PDF, 543 KB

english, 2004

10

Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein

Robi D. Mitra, Christopher M. Silva, Douglas C. Youvan

Journal:

Year:

1996

Language:

english

File:

PDF, 384 KB

english, 1996

11

Genetic Diversity and Novel SNP Discovery in Signaling Genes Revealed by Pooled Sequencing of Cardiomyopathy DNAs

Scot J. Matkovich, Todd E. Druley, Derek J. Van Booven, Sung Chun, Francesco M.L. Vallania, Anna Hindes, Justin C. Fay, Robi D. Mitra, Gerald W. Dorn II

Journal:

Journal of Cardiac Failure

Year:

2009

Language:

english

File:

PDF, 55 KB

english, 2009

12

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

Andrew L. Goodman, Nathan P. McNulty, Yue Zhao, Douglas Leip, Robi D. Mitra, Catherine A. Lozupone, Rob Knight, Jeffrey I. Gordon

Journal:

Cell Host & Microbe

Year:

2009

Language:

english

File:

PDF, 1.28 MB

english, 2009

13

Implications and frequency of APP, PSEN1, PSEN2, GRN and MAPT mutation in a well-characterized series of late-onset Alzheimer families

Carlos Cruchaga, Sumi Chakraverty, Gabe Haller, Mayo Kevin, Francesco L. Vallania, Mitra D. Robi, Tom D. Bird, Ramón Diaz-Arrestia, Bradley Boeve, Boeve Bradley, Neill R. Graff-Radford, Richard Mayeux

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 47 KB

english, 2010

14

Ultralow Protein Adsorbing Coatings from Clickable PEG Nanogel Solutions: Benefits of Attachment under Salt-Induced Phase Separation Conditions and Comparison with PEG/Albumin Nanogel Coatings

Donahoe, Casey D., Cohen, Thomas L., Li, Wenlu, Nguyen, Peter K., Fortner, John D., Mitra, Robi D., Elbert, Donald L.

Journal:

Year:

2013

Language:

english

File:

PDF, 626 KB

english, 2013

15

11-OR

Liu, Chang, Yang, Xiao, Duffy, Brian, Mohanakumar, T., Mitra, Robi D., Zody, Michael C., Pfeifer, John D.

Journal:

Human Immunology

Year:

2013

Language:

english

File:

PDF, 458 KB

english, 2013

16

Synonymous ABCA3 Variants Do Not Increase Risk for Neonatal Respiratory Distress Syndrome

Wambach, Jennifer A., Wegner, Daniel J., Heins, Hillary B., Druley, Todd E., Mitra, Robi D., Hamvas, Aaron, Cole, F. Sessions

Journal:

The Journal of Pediatrics

Year:

2014

Language:

english

File:

PDF, 281 KB

english, 2014

17

Mutation and expression analysis in medulloblastoma yields prognostic variants and a putative mechanism of disease for i17q tumors

Gabriel A Bien-Willner,Robi D Mitra

Journal:

Acta Neuropathologica Communications

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

18

Protein Quantification in Complex Mixtures by Solid Phase Single-Molecule Counting

Tessler, Lee A., Reifenberger, Jeffrey G., Mitra, Robi D.

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 1.69 MB

english, 2009

19

Amyotrophic lateral sclerosis onset is influenced by the burden of rare variants in known amyotrophic lateral sclerosis genes

Cady, Janet, Allred, Peggy, Bali, Taha, Pestronk, Alan, Goate, Alison, Miller, Timothy M., Mitra, Robi D., Ravits, John, Harms, Matthew B., Baloh, Robert H.

Journal:

Annals of Neurology

Year:

2015

Language:

english

File:

PDF, 939 KB

english, 2015

20

Toying with fate: Redirecting the differentiation of adrenocortical progenitor cells into gonadal-like tissue

Röhrig, Theresa, Pihlajoki, Marjut, Ziegler, Ricarda, Cochran, Rebecca S., Schrade, Anja, Schillebeeckx, Maximiliaan, Mitra, Robi D., Heikinheimo, Markku, Wilson, David B.

Journal:

Molecular and Cellular Endocrinology

Year:

2015

Language:

english

File:

PDF, 5.52 MB

english, 2015

21

Redesign of the monomer–monomer interface of Cre recombinase yields an obligate heterotetrameric complex

Zhang, Chi, Myers, Connie A., Qi, Zongtai, Mitra, Robi D., Corbo, Joseph C., Havranek, James J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.25 MB

english, 2015

22

Transposon Calling Cards

Mayhew, David, Mitra, Robi D.

Journal:

Cold Spring Harbor Protocols

Year:

2016

Language:

english

File:

PDF, 226 KB

english, 2016

23

Massively parallel single-nucleotide mutagenesis using reversibly terminated inosine

Haller, Gabe, Alvarado, David, McCall, Kevin, Mitra, Robi D, Dobbs, Matthew B, Gurnett, Christina A

Journal:

Year:

2016

Language:

english

File:

PDF, 421 KB

english, 2016

24

Calling Card Analysis in Budding Yeast

Mayhew, David, Mitra, Robi D.

Journal:

Cold Spring Harbor Protocols

Year:

2016

Language:

english

File:

PDF, 455 KB

english, 2016

25

Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER

Vallania, Francesco, Ramos, Enrique, Cresci, Sharon, Mitra, Robi D., Druley, Todd E.

Journal:

Journal of Visualized Experiments

Year:

2012

Language:

english

File:

PDF, 536 KB

english, 2012

26

Accurate typing of Human Leukocyte Antigen class I genes by Oxford nanopore sequencing

Liu, Chang, Xiao, Fangzhou, Hoisington-Lopez, Jessica, Lang, Kathrin, Quenzel, Philipp, Duffy, Brian, Mitra, Robi David

Journal:

The Journal of Molecular Diagnostics

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018

27

Rare Variants in APP, PSEN1 and PSEN2 Increase Risk for AD in Late-Onset Alzheimer's Disease Families

Cruchaga, Carlos, Chakraverty, Sumitra, Mayo, Kevin, Vallania, Francesco L. M., Mitra, Robi D., Faber, Kelley, Williamson, Jennifer, Bird, Tom, Diaz-Arrastia, Ramon, Foroud, Tatiana M., Boeve, Bradley

Journal:

Year:

2012

Language:

english

File:

PDF, 219 KB

english, 2012

28

Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin

Higdon, Charles W., Mitra, Robi D., Johnson, Stephen L., Leung, Yuk Fai

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

29

Origin and Consequences of the Relationship between Protein Mean and Variance

Vallania, Francesco Luigi Massimo, Sherman, Marc, Goodwin, Zane, Mogno, Ilaria, Cohen, Barak Alon, Mitra, Robi David, Poyatos, Juan F.

Journal:

Year:

2014

Language:

english

File:

PDF, 727 KB

english, 2014

30

An optimized, broadly applicable piggyBac transposon induction system

Qi, Zongtai, Wilkinson, Michael Nathaniel, Chen, Xuhua, Sankararaman, Sumithra, Mayhew, David, Mitra, Robi David

Journal:

Nucleic Acids Research

Year:

2017

File:

PDF, 3.54 MB

2017

31

An optimized, broadly applicable piggyBac transposon induction system

Qi, Zongtai, Wilkinson, Michael Nathaniel, Chen, Xuhua, Sankararaman, Sumithra, Mayhew, David, Mitra, Robi David

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.54 MB

english, 2017

32

Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia

Avey, Denis, Sankararaman, Sumithra, Yim, Aldrin K.Y., Barve, Ruteja, Milbrandt, Jeffrey, Mitra, Robi D.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.81 MB

english, 2018

33

Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma

Yen, Matthew, Qi, Zongtai, Chen, Xuhua, Cooper, John A., Mitra, Robi D., Onken, Michael D.

Journal:

BMC Medical Genomics

Year:

2018

Language:

english

File:

PDF, 2.90 MB

english, 2018

34

GENT-18. DIFFERENTIAL BRD4-BOUND STRETCH/SUPER ENHANCERS DRIVE CRITICAL SEX DIFFERENCES IN GBM PHENOTYPE

Kfoury, Najla, Qi, Zongtai, Berrett, Kristopher, Kim, Albert, Gertz, Jason, Mitra, Robi, Rubin, Joshua

Journal:

Year:

2016

Language:

english

File:

PDF, 94 KB

english, 2016

35

GENE-16. Brd4-BOUND STRETCH/SUPER ENHANCER USAGE UNDERLIES SEXUAL DIMORPHISM IN GLIOBLASTOMA

Kfoury, Najla, Qi, Zongtai, Sankararaman, Sumithra, Wilkinson, Michael, Broestl, Lauren, Berrett, Kristopher, Gertz, Jason, Mitra, Robi, Rubin, Joshua

Journal:

Year:

2017

File:

PDF, 90 KB

2017

36

Homotypic cooperativity and collective binding are determinants of bHLH specificity and function

Shively, Christian A., Liu, Jiayue, Chen, Xuhua, Loell, Kaiser, Mitra, Robi D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.87 MB

english, 2019

37

Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays

Liu, Jiayue, Shively, Christian A, Mitra, Robi D

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 5.15 MB

2020

38

Human L1 Transposition Dynamics Unraveled with Functional Data Analysis

Chen, Di, Cremona, Marzia A, Qi, Zongtai, Mitra, Robi D, Chiaromonte, Francesca, Makova, Kateryna D, Larracuente, Amanda

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 2.69 MB

2020

39

The qBED track: a novel genome browser visualization for point processes

Moudgil, Arnav, Li, Daofeng, Hsu, Silas, Purushotham, Deepak, Wang, Ting, Mitra, Robi D, Robinson, Peter

Journal:

Year:

2020

File:

PDF, 339 KB

2020